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idr (version 1.3)

Irreproducible Discovery Rate

Description

This is a package for estimating the copula mixture model and plotting correspondence curves. Details are in "Measuring reproducibility of high-throughput experiments" (2011), Annals of Applied Statistics, Vol. 5, No. 3, 1752-1779, by Li, Brown, Huang, and Bickel.

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Version

Install

install.packages('idr')

Monthly Downloads

372

Version

1.3

License

GPL (>= 2.0)

Maintainer

Qunhua Li

Last Published

June 21st, 2022

Functions in idr (1.3)

get.uri.2d

Compute the correspondence profile (Psi(t, v)) and the derivative of the correspondence profile (Psi'(t, v))
idr-package

Irreproducible discovery rate
est.IDR

Estimate the irreproducible discovery rate using the copula mixture model
salmon

Salmon data
m.step.2normal

M-step for parameterized bivariate 2-component Gaussian mixture models
select.IDR

Select observations according to IDR
d.binormal

Log density of bivariate Gaussian distribution with symmetric marginals
comp.uri

Compute the value of Psi and Psi' for a given t
simu.idr

Simulated data
loglik.2binormal

Compute log-likelihood of parameterized bivariate 2-component Gaussian mixture models
e.step.2normal

E-step for parameterized bivariate 2-component Gaussian mixture models
get.correspondence

Compute correspondence profiles
get.pseudo.mix

Compute the pseudo values of a mixture model from the empirical CDF