ieegio (version 0.0.9)

surface_to_surface: Transform surface between coordinate spaces

Description

Transforms surface vertex positions from one coordinate space or orientation to another, optionally applying an additional custom transform.

Usage

surface_to_surface(surface, space_from = "", space_to = "", transform = NULL)

Value

A transformed ieegio_surface object with updated vertex positions and transform metadata

Arguments

surface

an ieegio_surface object or file path; see as_ieegio_surface for valid inputs

space_from

source coordinate space; either an ieegio_space object (from new_space) or a character string; default is empty string

space_to

target coordinate space; either an ieegio_space object or a character string; default is empty string

transform

optional 4x4 affine transformation matrix or ieegio_transforms object to apply; see as_ieegio_transform

Details

The function handles orientation changes (e.g., "RAS" to "LPS") and optional custom transforms. It creates a transform chain consisting of: an affine (orientation alignment from source), the custom transform, and a post-affine (final orientation alignment to target).

If the provided transform has a "passive" interpretation, it is automatically converted to an "active" interpretation before being applied to the vertex coordinates.

See Also

as_ieegio_surface for creating surface objects, new_space for defining coordinate spaces, transform_orientation for orientation transforms, volume_to_surface for creating surfaces from volumes

Examples

library(ieegio)

# geometry
geom_file <- "gifti/GzipBase64/sujet01_Lwhite.surf.gii"

if(ieegio_sample_data(geom_file, test = TRUE)) {

surf_ras <- read_surface(ieegio_sample_data(geom_file))
plot(surf_ras)

# ---- Change axis orientation ------------------
# convert from RAS orientation to LPS
surf_lps <- surface_to_surface(
  surf_ras,
  space_from = new_space("", orientation = "RAS"),
  space_to = new_space("", orientation = "LPS")
)
plot(surf_lps)

# validate
lps_verts <- diag(c(-1, -1, 1, 1)) %*% surf_ras$geometry$vertices
range(surf_lps$geometry$vertices - lps_verts)

# ---- Apply transforms ------------------
transform <- matrix(
  byrow = TRUE, nrow = 4,
  c(
    0.5, 0, 0.3, 1,
    0, -1, 0.2, 2,
    0, 0.7, -0.5, 4,
    0, 0, 0, 1
  )
)
surf_stretch <- surface_to_surface(surf_ras, transform = transform)
plot(surf_stretch)

# validate
stretch_verts <- transform %*% surf_ras$geometry$vertices
range(surf_stretch$geometry$vertices - stretch_verts)


}