ld_matrix_local

Get LD matrix using local plink binary and reference dataset

Interface to the 'OpenGWAS' database API <https://api.opengwas.io/api/>. Includes a wrapper
to make generic calls to the API, plus convenience functions for
specific queries.

Gibran Hemani

ieugwasr

Interface to the 'OpenGWAS' Database API

Ben Elsworth

Tom Palmer

Rita Rasteiro

ld_matrix_local function

<dl><dt>variants</dt>
<dd>List of variants (rsids)</dd>
<dt>bfile</dt>
<dd>Path to bed/bim/fam ld reference panel</dd>
<dt>plink_bin</dt>
<dd>Specify path to plink binary. Default = <code>NULL</code>.
See <a href="https://github.com/explodecomputer/plinkbinr">https://github.com/explodecomputer/plinkbinr</a> for convenient access to plink binaries</dd>
<dt>with_alleles</dt>
<dd>Whether to append the allele names to the SNP names.
Default: <code>TRUE</code></dd></dl>

Arguments

Get LD matrix using local plink binary and reference dataset — ld_matrix_local

<dl>

<dt>variants</dt>
<dd>List of variants (rsids)</dd>


<dt>bfile</dt>
<dd>Path to bed/bim/fam ld reference panel</dd>


<dt>plink_bin</dt>
<dd>Specify path to plink binary. Default = <code>NULL</code>.
See <a href='https://github.com/explodecomputer/plinkbinr'>https://github.com/explodecomputer/plinkbinr</a> for convenient access to plink binaries</dd>


<dt>with_alleles</dt>
<dd>Whether to append the allele names to the SNP names.
Default: <code>TRUE</code></dd>

</dl>

ld_matrix_local: Get LD matrix using local plink binary and reference dataset

Description

Usage

Value

Arguments