phewas

This is faster than doing it manually through <code>associations</code>

Interface to the 'OpenGWAS' database API <https://api.opengwas.io/api/>. Includes a wrapper
to make generic calls to the API, plus convenience functions for
specific queries.

Gibran Hemani

ieugwasr

Interface to the 'OpenGWAS' Database API

Ben Elsworth

Tom Palmer

Rita Rasteiro

phewas function

<dl><dt>variants</dt>
<dd>Array of variants e.g. <code>c("rs234", "7:105561135-105563135")</code></dd>
<dt>pval</dt>
<dd>p-value threshold. Default = <code>0.00001</code></dd>
<dt>batch</dt>
<dd>Vector of batch IDs to search across. If <code><a href="/link/c()?package=ieugwasr&version=1.0.3" data-mini-rdoc="ieugwasr::c()">c()</a></code> (default) then returns all batches</dd>
<dt>opengwas_jwt</dt>
<dd>Used to authenticate protected endpoints. Login to https://api.opengwas.io to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT.</dd></dl>

Arguments

Perform fast phewas of a specific variants against all available GWAS datasets — phewas

<dl>

<dt>variants</dt>
<dd>Array of variants e.g. <code>c("rs234", "7:105561135-105563135")</code></dd>


<dt>pval</dt>
<dd>p-value threshold. Default = <code>0.00001</code></dd>


<dt>batch</dt>
<dd>Vector of batch IDs to search across. If <code><a href='https://rdrr.io/r/base/c.html'>c()</a></code> (default) then returns all batches</dd>


<dt>opengwas_jwt</dt>
<dd>Used to authenticate protected endpoints. Login to https://api.opengwas.io to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT.</dd>

</dl>

phewas: Perform fast phewas of a specific variants against all available GWAS datasets

Description

Usage

Value

Arguments