variants_chrpos

For a list of chromosome and positions, finds all variants within a given radius

Interface to the 'OpenGWAS' database API <https://api.opengwas.io/api/>. Includes a wrapper
to make generic calls to the API, plus convenience functions for
specific queries.

Gibran Hemani

ieugwasr

Interface to the 'OpenGWAS' Database API

Ben Elsworth

Tom Palmer

Rita Rasteiro

variants_chrpos function

<dl><dt>chrpos</dt>
<dd>list of <code>&lt;chr&gt;:&lt;pos&gt;</code> in build 37,
e.g. <code>c("3:46414943", "3:122991235")</code>. Also allows ranges e.g. <code>"7:105561135-105563135"</code></dd>
<dt>radius</dt>
<dd>Radius around each chrpos, default = <code>0</code></dd>
<dt>opengwas_jwt</dt>
<dd>Used to authenticate protected endpoints. Login to <a href="https://api.opengwas.io">https://api.opengwas.io</a> to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT.</dd></dl>

Arguments

Obtain information about chr pos and surrounding region — variants_chrpos

<dl>

<dt>chrpos</dt>
<dd>list of <code>&lt;chr&gt;:&lt;pos&gt;</code> in build 37,
e.g. <code>c("3:46414943", "3:122991235")</code>. Also allows ranges e.g. <code>"7:105561135-105563135"</code></dd>


<dt>radius</dt>
<dd>Radius around each chrpos, default = <code>0</code></dd>


<dt>opengwas_jwt</dt>
<dd>Used to authenticate protected endpoints. Login to <a href='https://api.opengwas.io'>https://api.opengwas.io</a> to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT.</dd>

</dl>

variants_chrpos: Obtain information about chr pos and surrounding region

Description

Usage

Value

Arguments