variants_gene

Provide a gene identified, either Ensembl or Entrez

Interface to the 'OpenGWAS' database API <https://api.opengwas.io/api/>. Includes a wrapper
to make generic calls to the API, plus convenience functions for
specific queries.

Gibran Hemani

ieugwasr

Interface to the 'OpenGWAS' Database API

Ben Elsworth

Tom Palmer

Rita Rasteiro

variants_gene function

<dl><dt>gene</dt>
<dd>Vector of genes, either Ensembl or Entrez,
e.g. <code>c("ENSG00000123374", "ENSG00000160791")</code> or <code>1017</code></dd>
<dt>radius</dt>
<dd>Radius around the gene region to include. Default = <code>0</code></dd>
<dt>opengwas_jwt</dt>
<dd>Used to authenticate protected endpoints. Login to <a href="https://api.opengwas.io">https://api.opengwas.io</a> to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT.</dd></dl>

Arguments

Obtain variants around a gene — variants_gene

<dl>

<dt>gene</dt>
<dd>Vector of genes, either Ensembl or Entrez,
e.g. <code>c("ENSG00000123374", "ENSG00000160791")</code> or <code>1017</code></dd>


<dt>radius</dt>
<dd>Radius around the gene region to include. Default = <code>0</code></dd>


<dt>opengwas_jwt</dt>
<dd>Used to authenticate protected endpoints. Login to <a href='https://api.opengwas.io'>https://api.opengwas.io</a> to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT.</dd>

</dl>

variants_gene: Obtain variants around a gene

Description

Usage

Value

Arguments