afl2_list

Data frame includes 1000 genomes metadata including sample sizes,
allele frequency and LD score, separated by 5 super populations
(EUR = European, AFR = African, EAS = East Asian, AMR = Admixed American,
SAS = South Asian)

Interface to the 'OpenGWAS' database API <https://api.opengwas.io/api/>. Includes a wrapper
to make generic calls to the API, plus convenience functions for
specific queries.

Gibran Hemani

ieugwasr

Interface to the 'OpenGWAS' Database API

Ben Elsworth

Tom Palmer

Rita Rasteiro

afl2_list function

<dl><dt>variantlist</dt>
<dd>Choose pre-defined list. <code>"reduced"</code> = ~20k SNPs that are
common in all super populations (default). <code>"hapmap3"</code> = ~1.3 million hm3 SNPs</dd>
<dt>opengwas_jwt</dt>
<dd>Used to authenticate protected endpoints. Login to <a href="https://api.opengwas.io">https://api.opengwas.io</a> to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT.</dd></dl>

Arguments

Retrieve a allele frequency and LD scores for pre-defined lists of variants — afl2_list

<dl>

<dt>variantlist</dt>
<dd>Choose pre-defined list. <code>"reduced"</code> = ~20k SNPs that are
common in all super populations (default). <code>"hapmap3"</code> = ~1.3 million hm3 SNPs</dd>


<dt>opengwas_jwt</dt>
<dd>Used to authenticate protected endpoints. Login to <a href='https://api.opengwas.io'>https://api.opengwas.io</a> to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT.</dd>

</dl>

afl2_list: Retrieve a allele frequency and LD scores for pre-defined lists of variants

Description

Usage

Value

Arguments