ieugwasr (version 1.1.0)

afl2_chrpos: Look up allele frequencies and LD scores for 1000 genomes populations by chrpos

Description

Look up allele frequencies and LD scores for 1000 genomes populations by chrpos

Usage

afl2_chrpos(
  chrpos,
  reference = "1000g",
  opengwas_jwt = get_opengwas_jwt(),
  ...
)

Value

Data frame containing ancestry specific LD scores and allele frequencies for each variant

Arguments

chrpos

list of <chr>:<pos> in build 37, e.g. c("3:46414943", "3:122991235"). Also allows ranges e.g "7:105561135-105563135"

reference

Default="1000g"

opengwas_jwt

Used to authenticate protected endpoints. Login to https://api.opengwas.io to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT.

...

Additional arguments passed to api_query().