edge.betweenness.community

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Community structure detection based on edge betweenness

Many networks consist of modules which are densely connected themselves but sparsely connected to other modules.

Keywords
graphs
Usage
edge.betweenness.community (graph, directed = TRUE,
    edge.betweenness = TRUE, merges = TRUE, bridges = TRUE,
    labels = TRUE)
edge.betweenness.community.merges (graph, edges)
Arguments
graph
The graph to analyze.
directed
Logical constant, whether to calculate directed edge betweenness for directed graphs. It is ignored for undirected graphs.
edge.betweenness
Logical constant, whether to return the edge betweenness of the edges at the time of their removal.
merges
Logical constant, whether to return the merge matrix representing the hierarchical community structure of the network. This argument is called merges, even if the community structure algorithm itself is divisive and not agglomerat
bridges
Logical constant, whether to return a list the edge removals which actually splitted a component of the graph.
labels
Logical constant, whether to contain the labels of the vertices in the result. More precisely, if the graph has a vertex attribute valled name, it will be part of the result object.
edges
Numeric vector, the ids of the edges to be removed from a graph, all edges should be present in the vector, their order specifies the order of removal.
Details

The edge betweenness score of an edge measures the number of shortest paths through it, see edge.betweenness for details. The idea of the edge betweenness based community structure detection is that it is likely that edges connecting separate modules have high edge betweenness as all the shortest paths from one module to another must traverse through them. So if we gradually remove the edge with the highest edge betweenness score we will get a hierarchical map, a rooted tree, called a dendrogram of the graph. The leafs of the tree are the individual vertices and the root of the tree represents the whole graph.

edge.betweenness.community performs this algorithm by calculating the edge betweenness of the graph, removing the edge with the highest edge betweenness score, then recalculating edge betweenness of the edges and again removing the one with the highest score, etc.

edge.betweeness.community returns various information collected throught the run of the algorithm. See the return value down here.

edge.betweenness.community.merges gets a list of edges and by gradually removes them from the graph it creates a merge matrix similar to the one returned by edge.betweenness.community.

Value

  • A named list is returned by edge.betweenness.community, with the following components:
  • removed.edgesNumeric vector, the edges of the graph, in the order of their removal.
  • edge.betweennessNumeric vector, the edge betweenness value of the removed edges, the order is the same as in removed.edges.
  • mergesMatrix containing the merges (ie. divisions) the algorithm performed, see the merges argument for the format.
  • bridgesNumeric vector, the steps (ie. edge removals) which resulted a split of a component in the graph.
  • labelsThe name argument of the vertices.
  • Note that some components may be missing or NULL if you do not request them, see the parameters.

    A numeric matrix is returned by edge.betweenness.community.merges. The matrix has two column and its format is the same as the merges slot of the result of edge.betweenness.community.

concept

  • Edge betweenness
  • Community structure

References

M Newman and M Girvan: Finding and evaluating community structure in networks, Physical Review E 69, 026113 (2004)

See Also

edge.betweenness for the definition and calculation of the edge betweenness, walktrap.community, fastgreedy.community, leading.eigenvector.community for other community detection methods. as.dendrogram in package stats for creating an R dendrogram object from the result of the clustering. See community.to.membership to create the actual communities after a number of edges removed from the network.

Aliases
  • edge.betweenness.community
  • edge.betweenness.community.merges
Examples
g <- barabasi.game(100,m=2)
eb <- edge.betweenness.community(g)

g <- graph.full(10) %du% graph.full(10)
g <- add.edges(g, c(0,10))
eb <- edge.betweenness.community(g)
E(g) [ eb$removed.edges[1] ]
Documentation reproduced from package igraph, version 0.5.5-3, License: GPL (>= 2)

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