# graph-motifs

From igraph v0.5.5-3
by Gabor Csardi

##### Graph motifs

Graph motifs are small subgraphs with a well-defined strucure. These functions search a graph for various motifs.

- Keywords
- graphs

##### Usage

```
graph.motifs(graph, size = 3, cut.prob = rep(0, size))
graph.motifs.no(graph, size = 3, cut.prob = rep(0, size))
graph.motifs.est(graph, size = 3, cut.prob = rep(0, size), sample.size =
vcount(graph)/10, sample = NULL)
```

##### Arguments

- graph
- Graph object, the input graph.
- size
- The size of the motif, currently 3 and 4 are supported only.
- cut.prob
- Numeric vector giving the probabilities that the
search graph is cut at a certain level. Its length should be the
same as the size of the motif (the
`size`

argument). By default no cuts are made. - sample.size
- The number of vertices to use as a starting point
for finding motifs. Only used if the
`sample`

argument is`NULL`

. - sample
- If not
`NULL`

then it specifies the vertices to use as a starting point for finding motifs.

##### Details

`graph.motifs`

searches a graph for motifs of a given size and
returns a numeric vector containing the number of different
motifs. The order of the motifs is defined by their isomorphism class,
see `graph.isoclass`

.

`graph.motifs.no`

calculates the total number of motifs of a
given size in graph.

`graph.motifs.est`

estimates the total number of motifs of a
given size in a graph based on a sample.

##### Value

`graph.motifs`

returns a numeric vector.`graph.motifs.no`

and`graph.motifs.est`

return a numeric constant.

##### concept

Graph motif

##### See Also

##### Examples

```
g <- barabasi.game(100)
graph.motifs(g, 3)
graph.motifs.no(g, 3)
graph.motifs.est(g, 3)
```

*Documentation reproduced from package igraph, version 0.5.5-3, License: GPL (>= 2)*

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