igraph v0.6.4
0
Monthly downloads
by Gabor Csardi
Network analysis and visualization
Routines for simple graphs and network analysis. igraph
can handle large graphs very well and provides functions for
generating random and regular graphs, graph visualization,
centrality indices and much more.
Functions in igraph
| Name | Description | |
| attributes | Graph, vertex and edge attributes | |
| constraint | Burt's constraint | |
| betweenness | Vertex and edge betweenness centrality | |
| graph.kautz | Kautz graphs | |
| graph.structure | Method for structural manipulation of graphs | |
| kleinberg | Kleinberg's centrality scores. | |
| layout.mds | Graph layout by multidimensional scaling | |
| edge.betweenness.community | Community structure detection based on edge betweenness | |
| dendPlot.communities | Community structure dendrogram plots | |
| graph-operators-by-name | Graph operators based on symbolic vertex names | |
| conversion between igraph and graphNEL graphs | Convert igraph graphs to graphNEL objects or back | |
| read.graph | Reading foreign file formats | |
| growing.random.game | Growing random graph generation | |
| power.law.fit | Fitting a power-law distribution function to discrete data | |
| graph.diversity | Graph diversity | |
| watts.strogatz.game | The Watts-Strogatz small-world model | |
| neighborhood | Neighborhood of graph vertices | |
| infomap.community | Infomap community finding | |
| page.rank | The Page Rank algorithm | |
| bipartite.projection | Project a bipartite graph | |
| get.edge.ids | Find the edge ids based on the incident vertices of the edges | |
| graph.maxflow | Maximum flow in a network | |
| static.power.law.game | Scale-free random graphs, from vertex fitness scores | |
| topological.sort | Topological sorting of vertices in a graph | |
| graph.full.bipartite | Create a full bipartite graph | |
| is.named | Named graphs | |
| grg.game | Geometric random graphs | |
| layout.drl | The DrL graph layout generator | |
| transitivity | Transitivity of a graph | |
| minimal.st.separators | Minimum size vertex separators | |
| barabasi.game | Generate scale-free graphs according to the Barabasi-Albert model | |
| is.degree.sequence | Degree sequences of graphs | |
| traits | Graph generation based on different vertex types | |
| assortativity | Assortativity coefficient | |
| minimum.spanning.tree | Minimum spanning tree | |
| community.to.membership | Common functions supporting community detection algorithms | |
| graph-isomorphism | Graph Isomorphism | |
| nexus | Query and download from the Nexus network repository | |
| spinglass.community | Finding communities in graphs based on statistical meachanics | |
| static.fitness.game | Random graphs from vertex fitness scores | |
| triad.census | Triad census, subgraphs with three vertices | |
| running.mean | Running mean of a time series | |
| leading.eigenvector.community | Community structure detecting based on the leading eigenvector of the community matrix | |
| as.igraph | Conversion to igraph | |
| Spectral coarse graining | Spectral Coarse Graining | |
| aging.prefatt.game | Generate an evolving random graph with preferential attachment and aging | |
| cocitation | Cocitation coupling | |
| graph.data.frame | Creating igraph graphs from data frames or vice-versa | |
| decompose.graph | Decompose a graph into components | |
| graph.bipartite | Create a bipartite graph | |
| eccentricity | Eccentricity and radius | |
| graph.coreness | K-core decomposition of graphs | |
| graph.de.bruijn | De Bruijn graphs. | |
| igraph options | Parameters for the igraph package | |
| dominator.tree | Dominator tree | |
| cohesive.blocks | Calculate Cohesive Blocks | |
| graph.bfs | Breadth-first search | |
| graph.graphdb | Load a graph from the graph database for testing graph isomorphism. | |
| modularity | Modularity of a community structure of a graph | |
| Drawing graphs | Drawing graphs | |
| graph.matching | Graph matching | |
| interconnected.islands | A graph with subgraphs that are each a random graph. | |
| layout.merge | Merging graph layouts | |
| bipartite.mapping | Decide whether a graph is bipartite | |
| shortest.paths | Shortest (directed or undirected) paths between vertices | |
| layout.sugiyama | The Sugiyama graph layout generator | |
| multilevel.community | Finding community structure by multi-level optimization of modularity | |
| rglplot | 3D plotting of graphs with OpenGL | |
| components | In- or out- component of a vertex | |
| scg | All-in-one Function for the SCG of Matrices and Graphs | |
| closeness | Closeness centrality of vertices | |
| clusters | Connected components of a graph | |
| Pie charts as vertices | Using pie charts as vertices in graph plots | |
| evcent | Find Eigenvector Centrality Scores of Network Positions | |
| iterators | Vertex and edge sequences and iterators | |
| igraph-package | The igraph package | |
| degree.sequence.game | Generate random graphs with a given degree sequence | |
| erdos.renyi.game | Generate random graphs according to the Erdos-Renyi model | |
| as.directed | Convert between directed and undirected graphs | |
| is.chordal | Chordality of a graph | |
| igraph.sample | Sampling a random integer sequence | |
| diameter | Diameter of a graph | |
| Hierarchical random graphs | Hierarchical random graphs | |
| k.regular.game | Create a random regular graph | |
| independent.vertex.sets | Independent vertex sets | |
| maximum.cardinality.search | Maximum cardinality search | |
| graph.lcf | Creating a graph from LCF notation | |
| layout.grid | Simple grid layout | |
| layout | Generate coordinates for plotting graphs | |
| reciprocity | Reciprocity of graphs | |
| rewire.edges | Rewires the endpoints of the edges of a graph randomly | |
| subgraph | Subgraph of a graph | |
| scgExtra | SCG Extra Functions | |
| unfold.tree | Convert a general graph into a forest | |
| vertex.connectivity | Vertex connectivity. | |
| walktrap.community | Community strucure via short random walks | |
| autocurve.edges | Optimal edge curvature when plotting graphs | |
| dendPlot.igraphHRG | HRG dendrogram plot | |
| revolver | Measuring the driving force in evolving networks | |
| graph.knn | Average nearest neighbor degree | |
| get.incidence | Incidence matrix of a bipartite graph | |
| igraph console | The igraph console | |
| graph.automorphisms | Number of automorphisms | |
| print.igraph | Print graphs to the terminal | |
| plot.igraph | Plotting of graphs | |
| scgSemiProjectors | Semi-Projectors | |
| label.propagation.community | Finding communities based on propagating labels | |
| tkigraph | Experimental basic igraph GUI | |
| get.stochastic | Stochastic matrix of a graph | |
| dendPlot | Plot dendrograms | |
| rewire | Graph rewiring | |
| scgGrouping | SCG Problem Solver | |
| tkplot | Interactive plotting of graphs | |
| contract.vertices | Contract several vertices into a single one | |
| bonpow | Find Bonacich Power Centrality Scores of Network Positions | |
| graph.laplacian | Graph Laplacian | |
| is.multiple | Find the multiple or loop edges in a graph | |
| similarity | Similarity measures of two vertices | |
| cliques | The functions find cliques, ie. complete subgraphs in a graph | |
| compare.communities | Compares community structures using various metrics | |
| conversion | Convert a graph to an adjacency matrix or an edge list | |
| girth | Girth of a graph | |
| igraph.undocumented | Undocumented and unsupportted igraph functions | |
| graph.constructors | Various methods for creating graphs | |
| graph-operators | Graph operators | |
| is.igraph | Is this object a graph? | |
| simplify | Simple graphs | |
| articulation.points | Articulation points of a graph | |
| arpack | ARPACK eigenvector calculation | |
| forest.fire.game | Forest Fire Network Model | |
| fastgreedy.community | Community structure via greedy optimization of modularity | |
| dyad.census | Dyad census of a graph | |
| biconnected.components | Biconnected components | |
| graph.dfs | Depth-first search | |
| graph.density | Graph density | |
| graph-motifs | Graph motifs | |
| get.adjlist | Adjacency lists | |
| line.graph | Line graph of a graph | |
| graph.adjacency | Create graphs from adjacency matrices | |
| subgraph.centrality | Find subgraph centrality scores of network positions | |
| permute.vertices | Permute the vertices of a graph | |
| graph.famous | Creating named graphs | |
| optimal.community | Optimal community structure | |
| convex.hull | Convex hull of a set of vertices | |
| communities | Functions to deal with the result of network community detection | |
| alpha.centrality | Find Bonacich alpha centrality scores of network positions | |
| Combining attributes | How igraph functions handle attributes when the graph changes | |
| canonical.permutation | Canonical permutation of a graph | |
| graph.strength | Strength or weighted vertex degree | |
| Vertex shapes | Various vertex shapes when plotting igraph graphs | |
| igraphdemo | Run igraph demos, step by step | |
| is.separator | Vertex separators | |
| degree | Degree and degree distribution of the vertices | |
| edge.connectivity | Edge connectivity. | |
| is.dag | Directed acyclic graphs | |
| graph.incidence | Create graphs from an incidence matrix | |
| minimum.size.separators | Minimum size vertex separators | |
| stCuts | List all (s,t)-cuts of a graph | |
| stMincuts | List all minimum $(s,t)$-cuts of a graph | |
| centralization | Centralization of a graph.tmax | |
| is.weighted | Weighted graphs | |
| is.mutual | Find mutual edges in a directed graph | |
| preference.game | Trait-based random generation | |
| Graphs from adjacency lists | Create graphs from adjacency lists | |
| graph.formula | Creating (small) graphs via a simple interface | |
| layout.star | Generate coordinates to place the vertices of a graph in a star-shape | |
| structure.info | Gaining information about graph structure | |
| write.graph | Writing the graph to a file in some format | |
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Details
| Date | 2013-02-02 |
| License | GPL (>= 2) |
| URL | http://igraph.sourceforge.net |
| SystemRequirements | gmp, libxml2 |
| Packaged | 2013-02-04 20:19:36 UTC; gaborcsardi |
| Repository | CRAN |
| Date/Publication | 2013-02-04 22:20:28 |
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