The functions find cliques, ie. complete subgraphs in a graph
These functions find all, the largest or all the maximal cliques in an undirected graph. The size of the largest clique can also be calculated.
cliques(graph, min=NULL, max=NULL) largest.cliques(graph) maximal.cliques(graph, min=NULL, max=NULL) clique.number(graph)
- The input graph, directed graphs will be considered as undirected ones, multiple edges and loops are ignored.
- Numeric constant, lower limit on the size of the cliques to
NULLmeans no limit, ie. it is the same as 0.
- Numeric constant, upper limit on the size of the cliques to
NULLmeans no limit.
cliques find all complete subgraphs in the input graph, obeying
the size limitations given in the
largest.cliques finds all largest cliques in the input graph. A
clique is largest if there is no other clique including more vertices.
maximal.cliques finds all maximal cliques in the input graph.
A clique in maximal if it cannot be extended to a larger clique. The
largest cliques are always maximal, but a maximal clique is not
neccessarily the largest.
clique.number calculates the size of the largest clique(s).
The current implementation of these functions searches
for maximal independent vertex sets (see
independent.vertex.sets) in the complementer graph.
clique.numberreturn a list containing numeric vectors of vertex ids. Each list element is a clique.
clique.numberreturns an integer constant.
- Maximal clique
- Largest clique
# this usually contains cliques of size six g <- erdos.renyi.game(100, 0.3) clique.number(g) cliques(g, min=6) largest.cliques(g) # To have a bit less maximal cliques, about 100-200 usually g <- erdos.renyi.game(100, 0.03) maximal.cliques(g)