assortativity

0th

Percentile

Assortativity coefficient

The assortativity coefficient is positive is similar vertices (based on some external property) tend to connect to each, and negative otherwise.

Keywords
graphs
Usage
assortativity(graph, types1, types2 = NULL, directed = TRUE)

assortativity_nominal(graph, types, directed = TRUE)

assortativity_degree(graph, directed = TRUE)

Arguments
graph

The input graph, it can be directed or undirected.

types1

The vertex values, these can be arbitrary numeric values.

types2

A second value vector to be using for the incoming edges when calculating assortativity for a directed graph. Supply NULL here if you want to use the same values for outgoing and incoming edges. This argument is ignored (with a warning) if it is not NULL and undirected assortativity coefficient is being calculated.

directed

Logical scalar, whether to consider edge directions for directed graphs. This argument is ignored for undirected graphs. Supply TRUE here to do the natural thing, i.e. use directed version of the measure for directed graphs and the undirected version for undirected graphs.

types

Vector giving the vertex types. They as assumed to be integer numbers, starting with one. Non-integer values are converted to integers with as.integer.

Details

The assortativity coefficient measures the level of homophyly of the graph, based on some vertex labeling or values assigned to vertices. If the coefficient is high, that means that connected vertices tend to have the same labels or similar assigned values.

M.E.J. Newman defined two kinds of assortativity coefficients, the first one is for categorical labels of vertices. assortativity_nominal calculates this measure. It is defines as

$$r=\frac{\sum_i e_{ii}-\sum_i a_i b_i}{1-\sum_i a_i b_i}$$

where \(e_{ij}\) is the fraction of edges connecting vertices of type \(i\) and \(j\), \(a_i=\sum_j e_{ij}\) and \(b_j=\sum_i e_{ij}\).

The second assortativity variant is based on values assigned to the vertices. assortativity calculates this measure. It is defined as

$$r=\frac1{\sigma_q^2}\sum_{jk} jk(e_{jk}-q_j q_k)$$

for undirected graphs (\(q_i=\sum_j e_{ij}\)) and as

$$r=\frac1{\sigma_o\sigma_i}\sum_{jk}jk(e_{jk}-q_j^o q_k^i)$$

for directed ones. Here \(q_i^o=\sum_j e_{ij}\), \(q_i^i=\sum_j e_{ji}\), moreover, \(\sigma_q\), \(sigma_o\) and \(sigma_i\) are the standard deviations of \(q\), \(q^o\) and \(q^i\), respectively.

The reason of the difference is that in directed networks the relationship is not symmetric, so it is possible to assign different values to the outgoing and the incoming end of the edges.

assortativity_degree uses vertex degree (minus one) as vertex values and calls assortativity.

Value

A single real number.

References

M. E. J. Newman: Mixing patterns in networks, Phys. Rev. E 67, 026126 (2003) http://arxiv.org/abs/cond-mat/0209450

M. E. J. Newman: Assortative mixing in networks, Phys. Rev. Lett. 89, 208701 (2002) http://arxiv.org/abs/cond-mat/0205405/

Aliases
  • assortativity
  • assortativity.degree
  • assortativity_degree
  • assortativity.nominal
  • assortativity_nominal
  • assortativity_nominal
  • assortativity_degree
Examples
# NOT RUN {
# random network, close to zero
assortativity_degree(sample_gnp(10000, 3/10000))

# BA model, tends to be dissortative
assortativity_degree(sample_pa(10000, m=4))
# }
Documentation reproduced from package igraph, version 1.2.2, License: GPL (>= 2)

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