iheatmapr (version 0.7.1)

add_col_dendro: add_col_dendro

Description

Adds column dendrogram to iheatmap object

Usage

# S4 method for Iheatmap,hclust
add_col_dendro(
  p,
  dendro,
  reorder = TRUE,
  side = c("top", "bottom"),
  size = 0.15,
  buffer = 0.005,
  xname = current_xaxis(p),
  yname = NULL,
  sname = "col_dendro"
)

Value

Iheatmap-class object, which can be printed to generate an interactive graphic

Arguments

p

iheatmap object

dendro

hclust object

reorder

reorder rows based on dendrogram order?

side

side of plot on which to add dendro

size

relative size of dendrogram (relative to the main heatmap)

buffer

amount of space to leave empty before this plot, relative to size of first heatmap

xname

internal name of xaxis

yname

internal name of yaxis

sname

internal name of shape

Author

Alicia Schep

See Also

add_col_clustering, iheatmap, add_row_dendro

Examples

mat <- matrix(rnorm(20), ncol = 5, nrow = 4)  
dend <- hclust(dist(t(mat)))
hm <- iheatmap(mat) %>% add_col_dendro(dend)

# Print heatmap if interactive session 
if (interactive()) hm