Description
Plots the coverage profile of the mapped plant sample.
Usage
plot_cov(
covs,
legend_status = TRUE,
nucleotide_status = TRUE,
window = 75,
nucleotide_info_version = "1_4_0",
virus_info,
...
)
Value
The coverage profile of the mapped plant sample.
Arguments
- covs
An RLE list of coverage information of one or more plant samples.
- legend_status
Whether display legend. Default is TRUE.
- nucleotide_status
Whether display a sliding window of A percentage and
CG content. Default is TRUE.
- window
The sliding window size. Default is 75.
- nucleotide_info_version
The version number (character string) of the
nucleotide information of the virus segments. Default is 1_4_0.
- virus_info
A DNAStringSet of virus segments. The format should be similar to virus_segments.
- ...
Other arguments that can be passed to plot,
lines, or legend.