imcExperiment (version 0.99.0)

cellIntensity: finds the intensities getter.

Description

finds the intensities getter.

sets cell Intensity slot to a new matrix. rows protein, columns are cells.

Usage

cellIntensity(object, ...)
# S4 method for imcExperiment
cellIntensity(object)
cellIntensity(object) <- value
# S4 method for imcExperiment,matrix
cellIntensity(object) <- value

Arguments

object

IMC container

...

additional arguments

value

matrix rows protein, columns are cells

Value

imcExperiment container

imcExperiment container

imcExperiment container

imcExperiment container

Examples

# NOT RUN {
data(imcdata)
dim(cellIntensity(imcdata))
data(imcdata);dim(cellIntensity(imcdata))
head(t(cellIntensity(imcdata)))
data(imcdata)
x<-asinh(counts(imcdata))
cellIntensity(imcdata)<-x
# }