imcExperiment (version 0.99.0)

getNeighborhood: finds the neighborhood information.

Description

finds the neighborhood information.

slow assignment for the histoCAT neighborhood data (matrix) columns are the neighbors

Usage

getNeighborhood(object, ...)
# S4 method for imcExperiment
getNeighborhood(object)
getNeighborhood(object) <- value
# S4 method for imcExperiment,matrix
getNeighborhood(object) <- value

Arguments

object

is IMC container

...

additional arguments

value

matrix rows cells, columns are neighborhood histoCAT output

Value

imcExperiment container

imcExperiment container data(imcdata) getNeighborhood(imcdata)

imcExperiment container

imcExperiment container

Examples

# NOT RUN {
data(imcdata)
getNeighborhood(imcdata)
data(imcdata)
x<-matrix(1,nrow=ncol(imcdata),ncol=2)
getNeighborhood(imcdata)<-x
data(imcdata)
x<-matrix(1,nrow=ncol(imcdata),ncol=2)
getNeighborhood(imcdata)<-x
# }