gene_segments

genes

segments

GENE_SEGMENTS

A comprehensive analytics framework for building reproducible pipelines on T-cell and B-cell immune receptor repertoire data.
Delivers multi-modal immune profiling (bulk, single-cell, CITE-seq/AbSeq, spatial, immunogenicity data),
feature engineering (ML-ready feature tables and matrices), and biomarker discovery workflows
(cohort comparisons, longitudinal tracking, repertoire similarity, enrichment).
Provides a user-friendly interface to widely used AIRR methods —
clonality/diversity, V(D)J usage, similarity, annotation, tracking, and many more.
Think Scanpy or Seurat, but for AIRR data, a.k.a. Adaptive Immune Receptor Repertoire, VDJ-seq, RepSeq, or
VDJ sequencing data. A successor to our previously published "tcR" R package (Nazarov 2015).

Vadim I. Nazarov

immunarch

Multi-Modal Immune Repertoire Analytics for Immunotherapy and
Vaccine Design in R

gene_segments function

Gene segments table — gene_segments

Gene segments table

gene_segments: Gene segments table

Description

Arguments