gene_segments

genes

segments

GENE_SEGMENTS

A comprehensive framework for bioinformatics analysis of bulk and single-cell
T-cell receptor and antibody repertoires. It provides seamless data loading, analysis and
visualisation for AIRR (Adaptive Immune Receptor Repertoire) data, both bulk immunosequencing (RepSeq)
and single-cell sequencing (scRNAseq). It implements most of the widely used AIRR analysis methods,
such as: clonality analysis, estimation of repertoire similarities in distribution of clonotypes
and gene segments, repertoire diversity analysis, annotation of clonotypes using external immune receptor
databases and clonotype tracking in vaccination and cancer studies. A successor to our
previously published 'tcR' immunoinformatics package (Nazarov 2015) <doi:10.1186/s12859-015-0613-1>.

Vadim Nazarov

immunarch

Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires

Vadim I. Nazarov

Vasily O. Tsvetkov

Eugene Rumynskiy

Anna Lorenc

Daniel J. Moore

Victor Greiff

ImmunoMind 

gene_segments function

Gene segments table — gene_segments

Gene segments table

gene_segments: Gene segments table

Description

Arguments