immdata

A testing dataset containing clonotypes.

datasets

A comprehensive framework for bioinformatics analysis of bulk and single-cell
T-cell receptor and antibody repertoires. It provides seamless data loading, analysis and
visualisation for AIRR (Adaptive Immune Receptor Repertoire) data, both bulk immunosequencing (RepSeq)
and single-cell sequencing (scRNAseq). It implements most of the widely used AIRR analysis methods,
such as: clonality analysis, estimation of repertoire similarities in distribution of clonotypes
and gene segments, repertoire diversity analysis, annotation of clonotypes using external immune receptor
databases and clonotype tracking in vaccination and cancer studies. A successor to our
previously published 'tcR' immunoinformatics package (Nazarov 2015) <doi:10.1186/s12859-015-0613-1>.

Vadim Nazarov

immunarch

Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires

Vadim I. Nazarov

Vasily O. Tsvetkov

Eugene Rumynskiy

Anna Lorenc

Daniel J. Moore

Victor Greiff

ImmunoMind 

immdata function

A list of two elements. First element "data" is a list with data frames with clonotype tables.
Second element "meta" is a metadata file.<dl class="dl-horizontal">
 <dt>data</dt><dd>List of immune repertoire data frames.</dd>
 <dt>meta</dt><dd>Metadata</dd>
 ...
</dl>

Format

Immune repertoire dataset — immdata

A list of two elements. First element "data" is a list with data frames with clonotype tables.
Second element "meta" is a metadata file.<dl class='dl-horizontal'>
 <dt>data</dt><dd>List of immune repertoire data frames.</dd>
 <dt>meta</dt><dd>Metadata</dd>
 ...
</dl>

Immune repertoire dataset

immdata: Immune repertoire dataset

Description

Usage

Arguments

Format