immunarch (version 0.9.1)

vis.clonal_family: Visualise clonal family tree: wrapper for calling on the entire repClonalFamily output

Description

Visualise clonal family tree: wrapper for calling on the entire repClonalFamily output

Usage

# S3 method for clonal_family
vis(.data, ...)

Value

A ggraph object.

Arguments

.data

Clonal families from 1 or multiple samples: repClonalFamily output.

...

Not used here.

Examples

data(bcrdata)
bcr_data <- bcrdata$data

clonal_family <- bcr_data %>%
  seqCluster(seqDist(bcr_data), .fixed_threshold = 3) %>%
  repGermline(.threads = 1) %>%
  repAlignLineage(.min_lineage_sequences = 2, .align_threads = 2, .nofail = TRUE) %>%
  repClonalFamily(.threads = 1, .nofail = TRUE) %>%
  vis()