length_dist_simulation

A vector containing 10000 VDJ lengths for simulating
of fully random sequences (independent of germline genes)

datasets

Simulate full B-cell and T-cell receptor repertoires using an in silico
recombination process that includes a wide variety of tunable parameters to introduce noise and biases.
Additional post-simulation modification functions allow the user to implant motifs or codon biases as
well as remodeling sequence similarity architecture. The output repertoires contain records of all
relevant repertoire dimensions and can be analyzed using provided repertoire analysis functions.
Preprint is available at bioRxiv (Weber et al., 2019 <doi:10.1101/759795>).

C<c3><a9>dric R. Weber

immuneSIM

Tunable Simulation of B- And T-Cell Receptor Repertoires

Victor Greiff

length_dist_simulation function

A vector with 10000 entries:<dl class="dl-horizontal">
 <dt>length</dt><dd>VDJ nucleotide lengths sampled from murine naive
 follicular B-cell data, Greiff 2017</dd>
</dl>

Format

Vector containing VDJ length distributions — length_dist_simulation

A vector with 10000 entries:<dl class='dl-horizontal'>
 <dt>length</dt><dd>VDJ nucleotide lengths sampled from murine naive
 follicular B-cell data, Greiff 2017</dd>
</dl>

length_dist_simulation: Vector containing VDJ length distributions

Description

Usage

Arguments

Format