list_example_repertoires

A list containing two example repertoires (100 sequences each)
simulated with immuneSIM using default parameters.
These repertoires are used in the examples.

datasets

Simulate full B-cell and T-cell receptor repertoires using an in silico
recombination process that includes a wide variety of tunable parameters to introduce noise and biases.
Additional post-simulation modification functions allow the user to implant motifs or codon biases as
well as remodeling sequence similarity architecture. The output repertoires contain records of all
relevant repertoire dimensions and can be analyzed using provided repertoire analysis functions.
Preprint is available at bioRxiv (Weber et al., 2019 <doi:10.1101/759795>).

C<c3><a9>dric R. Weber

immuneSIM

Tunable Simulation of B- And T-Cell Receptor Repertoires

Victor Greiff

list_example_repertoires function

A list with 2 entries:<dl class="dl-horizontal">
 <dt>example_repertoire_A</dt><dd>Repertoire simulated using standard parameters (A)</dd>
 <dt>example_repertoire_A</dt><dd>Repertoire simulated using standard parameters (B)</dd>
</dl>

Format

Example repertoires — list_example_repertoires

A list with 2 entries:<dl class='dl-horizontal'>
 <dt>example_repertoire_A</dt><dd>Repertoire simulated using standard parameters (A)</dd>
 <dt>example_repertoire_A</dt><dd>Repertoire simulated using standard parameters (B)</dd>
</dl>

list_example_repertoires: Example repertoires

Description

Usage

Arguments

Format