HLA_typing_1

Synthetic HLA typing data for 10 individuals for the HLA-A, B, C, DRB1, DRB3/4/5,
DQB1, DQA1, DPB1 and DPA1 loci.

datasets

A comprehensive toolkit for clinical Human Leukocyte Antigen (HLA) informatics, built on 'tidyverse' <https://tidyverse.tidyverse.org/> principles and making use of genotype list string (GL string, Mack et al. (2023) <doi:10.1111/tan.15126>) for storing and computing HLA genotype data. Specific functionalities include: coercion of HLA data in tabular format to and from GL string; calculation of matching and mismatching in all directions, with multiple output formats; automatic formatting of HLA data for searching within a GL string; truncation of molecular HLA data to a specific number of fields; and reading HLA genotypes in HML files and extracting the GL string.

Nicholas Brown

immunogenetr

A Comprehensive Toolkit for Clinical HLA Informatics

Busra Coskun

HLA_typing_1 function

A tibble:<dl>
 <dt>patient</dt>
<dd>Patients 1-10</dd> <dt>A1:DPB1_2</dt>
<dd>HLA allele names</dd> ...</dl>

Format

Synthetic HLA typing data for 10 individuals for the HLA-A, B, C, DRB1, DRB3/4/5,
DQB1, DQA1, DPB1 and DPA1 loci. — HLA_typing_1

A tibble:<dl>
 <dt>patient</dt>
<dd>Patients 1-10</dd>

 <dt>A1:DPB1_2</dt>
<dd>HLA allele names</dd>

 ...

</dl>

HLA_typing_1: Synthetic HLA typing data for 10 individuals for the HLA-A, B, C, DRB1, DRB3/4/5, DQB1, DQA1, DPB1 and DPA1 loci.

Description

Usage

Arguments

Format