Haplotype_frequencies

Ten HLA-A~C~B~DRB3/4/5~DRB1~DQA1~DQB1~DPA1~DPB1 haplotypes and their
frequencies in the global population.

datasets

A comprehensive toolkit for clinical Human Leukocyte Antigen (HLA) informatics, built on 'tidyverse' <https://tidyverse.tidyverse.org/> principles and making use of genotype list string (GL string, Mack et al. (2023) <doi:10.1111/tan.15126>) for storing and computing HLA genotype data. Specific functionalities include: coercion of HLA data in tabular format to and from GL string; calculation of matching and mismatching in all directions, with multiple output formats; automatic formatting of HLA data for searching within a GL string; truncation of molecular HLA data to a specific number of fields; and reading HLA genotypes in HML files and extracting the GL string.

Nicholas Brown

immunogenetr

A Comprehensive Toolkit for Clinical HLA Informatics

Busra Coskun

Haplotype_frequencies function

A tibble:<dl>
 <dt>HLA-A:HLA-DPB1</dt>
<dd>HLA allele names</dd> <dt>Global_Fq</dt>
<dd>haplotype frequencies</dd> <dt>Global_n</dt>
<dd>haplotype observations</dd> <dt>Global_rank</dt>
<dd>haplotype rank</dd> ...</dl>

Format

Ten HLA-A~C~B~DRB3/4/5~DRB1~DQA1~DQB1~DPA1~DPB1 haplotypes and their
frequencies in the global population. — Haplotype_frequencies

A tibble:<dl>
 <dt>HLA-A:HLA-DPB1</dt>
<dd>HLA allele names</dd>

 <dt>Global_Fq</dt>
<dd>haplotype frequencies</dd>

 <dt>Global_n</dt>
<dd>haplotype observations</dd>

 <dt>Global_rank</dt>
<dd>haplotype rank</dd>

 ...

</dl>

Haplotype_frequencies: Ten HLA-A~C~B~DRB3/4/5~DRB1~DQA1~DQB1~DPA1~DPB1 haplotypes and their frequencies in the global population.

Description

Usage

Arguments

Format