HLA_dictionary

Data on HLA alleles in the 2008 HLA dictionary

datasets

A comprehensive toolkit for clinical Human Leukocyte Antigen (HLA) informatics, built on 'tidyverse' <https://tidyverse.tidyverse.org/> principles and making use of genotype list string (GL string, Mack et al. (2023) <doi:10.1111/tan.15126>) for storing and computing HLA genotype data. Specific functionalities include: coercion of HLA data in tabular format to and from GL string; calculation of matching and mismatching in all directions, with multiple output formats; automatic formatting of HLA data for searching within a GL string; truncation of molecular HLA data to a specific number of fields; and reading HLA genotypes in HML files and extracting the GL string.

Nicholas Brown

immunogenetr

A Comprehensive Toolkit for Clinical HLA Informatics

Busra Coskun

HLA_dictionary function

A tibble:<dl>
 <dt>IPD.Accession</dt>
<dd>IPD-IMGT/HLA Accession number</dd> <dt>HLA.Allele</dt>
<dd>HLA allele name</dd> <dt>WHO.Assigned.Type</dt>
<dd>WHO-assigned serologic equivalent</dd> ...</dl>

Format

Data on HLA alleles in the 2008 HLA dictionary — HLA_dictionary

A tibble:<dl>
 <dt>IPD.Accession</dt>
<dd>IPD-IMGT/HLA Accession number</dd>

 <dt>HLA.Allele</dt>
<dd>HLA allele name</dd>

 <dt>WHO.Assigned.Type</dt>
<dd>WHO-assigned serologic equivalent</dd>

 ...

</dl>

HLA_dictionary: Data on HLA alleles in the 2008 HLA dictionary

Description

Usage

Arguments

Format