get_country_inputs_1997_to_present

Load and return a tibble containing raw influenza surveillance data for the country of interest. Data are from <a href="https://apps.who.int/flumart/Default?ReportNo=12">WHO Flu Mart</a>.

Reconstruct birth-year specific probabilities of immune imprinting to influenza A, using the methods of Gostic et al. (2016) <doi:10.1126/science.aag1322>. Plot, save, or export the calculated probabilities for use in your own research. By default, the package calculates subtype-specific imprinting probabilities, but with user-provided frequency data, it is possible to calculate probabilities for arbitrary kinds of primary exposure to influenza A, including primary vaccination and exposure to specific clades, strains, etc.

Alex Byrnes

imprinting

Calculate Birth Year-Specific Probabilities of Immune Imprinting
to Influenza

Katelyn Gostic

get_country_inputs_1997_to_present function

<dl><dt>country</dt>
<dd>name of country. Run <code>show_available_countries()</code> for a list of options.</dd>
<dt>max_year</dt>
<dd>results will be output for all available years up to <code>max_year</code>.</dd></dl>

Arguments

Load and return a tibble containing raw influenza surveillance data for the country of interest. Data are from <a href='https://apps.who.int/flumart/Default?ReportNo=12'>WHO Flu Mart</a>.

Return raw flu surveillance data for a specific country — get_country_inputs_1997_to_present

<dl>

<dt>country</dt>
<dd>name of country. Run <code>show_available_countries()</code> for a list of options.</dd>


<dt>max_year</dt>
<dd>results will be output for all available years up to <code>max_year</code>.</dd>

</dl>

get_country_inputs_1997_to_present: Return raw flu surveillance data for a specific country

Description

Usage

Value

Arguments

Examples