intensity_PXD000501

This dataset contains three biological replicates with three technical replicates each for the conditiones media (CM) and the whole cell lysates (WCL) of C8-D1A cell lines. The dataset within this package contains proteins iBAQ intensity processed using MaxQuant. More information can be found on ProteomeExchange public repository (http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000501) or in the original paper (see reference).

datasets

The package contains a collection of functions for left-censored missing data imputation. Left-censoring is a special case of missing not at random (MNAR)  mechanism that generates non-responses in proteomics experiments. The package also contains functions to artificially generate peptide/protein expression data (log-transformed) as random draws from a multivariate Gaussian distribution as well as a function to generate missing data (both randomly and non-randomly). For comparison reasons, the package also contains several wrapper functions for the imputation of non-responses that are missing at random. 

Cosmin Lazar

imputeLCMD

A collection of methods for left-censored missing data
        imputation

intensity_PXD000501 function

Original MaxQuant data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000501

intensity_PXD000501: Dataset PXD000501 from ProteomeXchange.

Description

Usage

Arguments

source

References

Examples