pp_exp

Dataframe of transcriptomic data (natural scale) containing genes as rows and samples as columns. Note: Gene names should be set as row names and duplicates are not allowed. Missing values are not allowed within the expression matrix. Check example- head(example_data): <code><a rd-options="" href="/link/example_data?package=imsig&version=1.1.3" data-mini-rdoc="imsig::example_data">example_data</a></code>.

Subsets the user's dataset based on the genes that are common to the users dataset and ImSig.

Estimate the relative abundance of tissue-infiltrating immune subpopulations abundances using gene expression data.

Ajit Nirmal

imsig

Immune Cell Gene Signatures for Profiling the Microenvironment
of Solid Tumours

pp_exp function

Dataframe of transcriptomic data (natural scale) containing genes as rows and samples as columns. Note: Gene names should be set as row names and duplicates are not allowed. Missing values are not allowed within the expression matrix. Check example- head(example_data): <code><a rd-options='' href='example_data'>example_data</a></code>.

pp_exp: Pre-processing expression matrix

Description

Usage

Arguments

Value