HeatmapExpPlotly

Create an interactive heatmap of top variable genes using Heatmaply.

A 'shiny' app that supports both dual and bulk RNA-seq, with the dual
RNA-seq functionality offering the flexibility to perform either a
sequential approach (where reads are mapped separately to each genome)
or a combined approach (where reads are aligned to a single merged
genome). The user-friendly interface automates the analysis process,
providing step-by-step guidance, making it easy for users to navigate
between different analysis steps, and download intermediate results
and publication-ready plots.

Carmine Fruggiero

inDAGO

A GUI for Dual and Bulk RNA-Sequencing Analysis

Gaetano Aufiero

HeatmapExpPlotly function

<dl><dt>x</dt>
<dd>Numeric matrix of log-CPM values (genes × samples), e.g., from edgeR::cpm().</dd>
<dt>ColorPanel</dt>
<dd>Character. Name of a continuous palette from the paletteer package.</dd>
<dt>scale</dt>
<dd>Character. Scaling mode: "row", "column", or "none".</dd>
<dt>cluster</dt>
<dd>Character or logical. Clustering option for dendrogram: "both", "row", "column", or "none".</dd>
<dt>show_names</dt>
<dd>Character. One of "both", "row", "column", or "none" to display row/column labels.</dd>
<dt>NumGenes</dt>
<dd>Integer. Number of top-variance genes to include in the heatmap.</dd></dl>

Arguments

HeatmapExpPlotly — HeatmapExpPlotly

<dl>

<dt>x</dt>
<dd>Numeric matrix of log-CPM values (genes × samples), e.g., from edgeR::cpm().</dd>


<dt>ColorPanel</dt>
<dd>Character. Name of a continuous palette from the paletteer package.</dd>


<dt>scale</dt>
<dd>Character. Scaling mode: "row", "column", or "none".</dd>


<dt>cluster</dt>
<dd>Character or logical. Clustering option for dendrogram: "both", "row", "column", or "none".</dd>


<dt>show_names</dt>
<dd>Character. One of "both", "row", "column", or "none" to display row/column labels.</dd>


<dt>NumGenes</dt>
<dd>Integer. Number of top-variance genes to include in the heatmap.</dd>

</dl>

HeatmapExpPlotly: HeatmapExpPlotly

Description

Usage

Value

Arguments

Details