inDAGO (version 1.0.0)

IndexingComb: Combined indexing

Description

Combined indexing

Usage

IndexingComb(
  basename,
  reference,
  gappedIndex,
  indexSplit,
  memory,
  TH_subread,
  gen1,
  gen2,
  outfolder,
  tempfolder = file.path(fs::path_temp(), "TempDirSum_3738"),
  tag1,
  tag2
)

Arguments

basename

output basename

reference

reference genome

gappedIndex

gapped structure

indexSplit

split structure

memory

handling memory

TH_subread

threshold memory usage

gen1

first reference genome

gen2

second reference genome

outfolder

output folder

tempfolder

temporary folder

tag1

first genome label

tag2

second genome label