IndexingSequentialProgressive

A 'shiny' app that supports both dual and bulk RNA-seq, with the dual
RNA-seq functionality offering the flexibility to perform either a
sequential approach (where reads are mapped separately to each genome)
or a combined approach (where reads are aligned to a single merged
genome). The user-friendly interface automates the analysis process,
providing step-by-step guidance, making it easy for users to navigate
between different analysis steps, and download intermediate results
and publication-ready plots.

Carmine Fruggiero

inDAGO

A GUI for Dual and Bulk RNA-Sequencing Analysis

Gaetano Aufiero

IndexingSequentialProgressive function

<dl><dt>outfolder1</dt>
<dd>first output folder</dd>
<dt>outfolder2</dt>
<dd>second output folder</dd>
<dt>refgen1</dt>
<dd>first reference genome</dd>
<dt>refgen2</dt>
<dd>second reference genome</dd>
<dt>gappedIndex</dt>
<dd>gapped structure</dd>
<dt>indexSplit</dt>
<dd>split structure</dd>
<dt>memory</dt>
<dd>handling memory</dd>
<dt>TH_subread</dt>
<dd>threshold memory usage</dd></dl>

Arguments

Indexing sequential progressive — IndexingSequentialProgressive

<dl>

<dt>outfolder1</dt>
<dd>first output folder</dd>


<dt>outfolder2</dt>
<dd>second output folder</dd>


<dt>refgen1</dt>
<dd>first reference genome</dd>


<dt>refgen2</dt>
<dd>second reference genome</dd>


<dt>gappedIndex</dt>
<dd>gapped structure</dd>


<dt>indexSplit</dt>
<dd>split structure</dd>


<dt>memory</dt>
<dd>handling memory</dd>


<dt>TH_subread</dt>
<dd>threshold memory usage</dd>

</dl>

IndexingSequentialProgressive: Indexing sequential progressive

Description

Usage

Arguments