QualityCheckAnalysis

A 'shiny' app that supports both dual and bulk RNA-seq, with the dual
RNA-seq functionality offering the flexibility to perform either a
sequential approach (where reads are mapped separately to each genome)
or a combined approach (where reads are aligned to a single merged
genome). The user-friendly interface automates the analysis process,
providing step-by-step guidance, making it easy for users to navigate
between different analysis steps, and download intermediate results
and publication-ready plots.

Carmine Fruggiero

inDAGO

A GUI for Dual and Bulk RNA-Sequencing Analysis

Gaetano Aufiero

QualityCheckAnalysis function

<dl><dt>directoryInput</dt>
<dd>sample directory</dd>
<dt>inputFormat</dt>
<dd>raw read format</dd>
<dt>Nodes</dt>
<dd>cores</dd>
<dt>ReadsNumber</dt>
<dd>chunk</dd>
<dt>directoryOutput</dt>
<dd>output folder</dd>
<dt>tempFolder</dt>
<dd>temporary folder</dd></dl>

Arguments

QUALITY CONTROL ANALYSIS — QualityCheckAnalysis

<dl>

<dt>directoryInput</dt>
<dd>sample directory</dd>


<dt>inputFormat</dt>
<dd>raw read format</dd>


<dt>Nodes</dt>
<dd>cores</dd>


<dt>ReadsNumber</dt>
<dd>chunk</dd>


<dt>directoryOutput</dt>
<dd>output folder</dd>


<dt>tempFolder</dt>
<dd>temporary folder</dd>

</dl>

QualityCheckAnalysis: QUALITY CONTROL ANALYSIS

Description

Usage

Arguments