barplotExp

Create a barplot of library sizes per sample, optionally using effective library sizes.

A 'shiny' app that supports both dual and bulk RNA-seq, with the dual
RNA-seq functionality offering the flexibility to perform either a
sequential approach (where reads are mapped separately to each genome)
or a combined approach (where reads are aligned to a single merged
genome). The user-friendly interface automates the analysis process,
providing step-by-step guidance, making it easy for users to navigate
between different analysis steps, and download intermediate results
and publication-ready plots.

Carmine Fruggiero

inDAGO

A GUI for Dual and Bulk RNA-Sequencing Analysis

Gaetano Aufiero

barplotExp function

<dl><dt>x</dt>
<dd>A DGEList object from "edgeR".</dd>
<dt>palette</dt>
<dd>Character. Name of a discrete color palette from the "paletteer" package.</dd>
<dt>main</dt>
<dd>Character. Title for the barplot.</dd>
<dt>selectOrder</dt>
<dd>Character. Either "Groups" (order samples by group) or "Samples" (order by sample name).</dd>
<dt>effecLibSize</dt>
<dd>Logical. If TRUE, use effective library size (norm factors × raw size); otherwise use raw size.</dd></dl>

Arguments

barplotExp — barplotExp

<dl>

<dt>x</dt>
<dd>A DGEList object from "edgeR".</dd>


<dt>palette</dt>
<dd>Character. Name of a discrete color palette from the "paletteer" package.</dd>


<dt>main</dt>
<dd>Character. Title for the barplot.</dd>


<dt>selectOrder</dt>
<dd>Character. Either "Groups" (order samples by group) or "Samples" (order by sample name).</dd>


<dt>effecLibSize</dt>
<dd>Logical. If TRUE, use effective library size (norm factors × raw size); otherwise use raw size.</dd>

</dl>

barplotExp: barplotExp

Description

Usage

Value

Arguments

Details