boxplotExp

Generate a boxplot of log-CPM expression values per sample, colored by group.

A 'shiny' app that supports both dual and bulk RNA-seq, with the dual
RNA-seq functionality offering the flexibility to perform either a
sequential approach (where reads are mapped separately to each genome)
or a combined approach (where reads are aligned to a single merged
genome). The user-friendly interface automates the analysis process,
providing step-by-step guidance, making it easy for users to navigate
between different analysis steps, and download intermediate results
and publication-ready plots.

Carmine Fruggiero

inDAGO

A GUI for Dual and Bulk RNA-Sequencing Analysis

Gaetano Aufiero

boxplotExp function

<dl><dt>x</dt>
<dd>A DGEList object from "edgeR".</dd>
<dt>y</dt>
<dd>Numeric matrix of log-CPM values (genes × samples), e.g., from edgeR::cpm().</dd>
<dt>palette</dt>
<dd>Character. Name of a discrete palette from the paletteer package.</dd>
<dt>main</dt>
<dd>Character. Title for the boxplot.</dd>
<dt>selectOrder</dt>
<dd>Character. Either "Groups" (order samples by group) or "Samples" (order by sample name).</dd></dl>

Arguments

boxplotExp — boxplotExp

<dl>

<dt>x</dt>
<dd>A DGEList object from "edgeR".</dd>


<dt>y</dt>
<dd>Numeric matrix of log-CPM values (genes × samples), e.g., from edgeR::cpm().</dd>


<dt>palette</dt>
<dd>Character. Name of a discrete palette from the paletteer package.</dd>


<dt>main</dt>
<dd>Character. Title for the boxplot.</dd>


<dt>selectOrder</dt>
<dd>Character. Either "Groups" (order samples by group) or "Samples" (order by sample name).</dd>

</dl>

boxplotExp: boxplotExp

Description

Usage

Value

Arguments

Details