checkMetadata

Validate and extract non-empty annotation fields from a GTF file.

A 'shiny' app that supports both dual and bulk RNA-seq, with the dual
RNA-seq functionality offering the flexibility to perform either a
sequential approach (where reads are mapped separately to each genome)
or a combined approach (where reads are aligned to a single merged
genome). The user-friendly interface automates the analysis process,
providing step-by-step guidance, making it easy for users to navigate
between different analysis steps, and download intermediate results
and publication-ready plots.

Carmine Fruggiero

inDAGO

A GUI for Dual and Bulk RNA-Sequencing Analysis

Gaetano Aufiero

checkMetadata function

<dl><dt>gtfPath</dt>
<dd>Character. Path to the directory or file location of the GTF file.</dd>
<dt>typeFilter</dt>
<dd>Character. The feature type to filter on (e.g., "gene", "exon").</dd></dl>

Arguments

checkMetadata — checkMetadata

<dl>

<dt>gtfPath</dt>
<dd>Character. Path to the directory or file location of the GTF file.</dd>


<dt>typeFilter</dt>
<dd>Character. The feature type to filter on (e.g., "gene", "exon").</dd>

</dl>

checkMetadata: checkMetadata

Description

Usage

Value

Arguments

Details