mdsinfo

Compute MDS coordinates for expression data using limma's plotMDS.

A 'shiny' app that supports both dual and bulk RNA-seq, with the dual
RNA-seq functionality offering the flexibility to perform either a
sequential approach (where reads are mapped separately to each genome)
or a combined approach (where reads are aligned to a single merged
genome). The user-friendly interface automates the analysis process,
providing step-by-step guidance, making it easy for users to navigate
between different analysis steps, and download intermediate results
and publication-ready plots.

Carmine Fruggiero

inDAGO

A GUI for Dual and Bulk RNA-Sequencing Analysis

Gaetano Aufiero

mdsinfo function

<dl><dt>matrix</dt>
<dd>A DGEList object.</dd>
<dt>top</dt>
<dd>Integer. Number of top most variable genes to include in MDS.</dd>
<dt>gene.selection</dt>
<dd>Method for gene selection: one of "pairwise", "common", or "logFC".</dd></dl>

Arguments

mdsinfo — mdsinfo

<dl>

<dt>matrix</dt>
<dd>A DGEList object.</dd>


<dt>top</dt>
<dd>Integer. Number of top most variable genes to include in MDS.</dd>


<dt>gene.selection</dt>
<dd>Method for gene selection: one of "pairwise", "common", or "logFC".</dd>

</dl>

mdsinfo: mdsinfo

Description

Usage

Value

Arguments

Details