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inbreedR (version 0.1.0)

Analysing Inbreeding Based on Genetic Markers

Description

A framework for analysing inbreeding and heterozygosity-fitness correlations (HFCs) from microsatellite and SNP markers.

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Version

Install

install.packages('inbreedR')

Monthly Downloads

304

Version

0.1.0

License

GPL-2

Maintainer

Martin A Stoffel

Last Published

September 5th, 2015

Functions in inbreedR (0.1.0)

mouse_msats

Oldfield mouse microsatellite data
g2_microsats

Estimating g2 from microsatellite data
convert_raw

Genotype format converter
bodyweight

Oldfield mouse bodyweight data
plot.inbreed

Plot an inbreed object
g2_snps

Estimating g2 from SNP data
check_data

Checks the data for consistency with the inbreedR working format.
inbreedR

inbreedR: Workflows for analysing variance in inbreeding and HFCs based on SNP or microsatellite markers.
resample_g2

Identity disequilibrium (g2) for different subsets of markers
mouse_snps

Oldfield mouse SNP data
print.inbreed

Print an inbreed object
HHC

Calculates heterzygosity-heterozygosity correlations with standardized multilocus heterozygosities (sMLH)
sMLH

Calculate standardized multilocus heterozygosity (sMLH)
r2_Wf

Expected r2 between inbreeding level (f) and fitness (W)
r2_hf

Expected r2 between standardized multilocus heterozygosity (h) and inbreeding level (f)