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inbreedR (version 0.2.0)
Analysing Inbreeding Based on Genetic Markers
Description
A framework for analysing inbreeding and heterozygosity-fitness correlations (HFCs) from microsatellite and SNP markers.
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Install
install.packages('inbreedR')
Monthly Downloads
335
Version
0.2.0
License
GPL-2
Maintainer
Martin A Stoffel
Last Published
October 6th, 2015
Functions in inbreedR (0.2.0)
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bodyweight
Oldfield mouse bodyweight data
check_data
Checks the data for consistency with the inbreedR working format.
print.inbreed
Print an inbreed object
convert_raw
Genotype format converter
sMLH
Calculate standardized multilocus heterozygosity (sMLH)
r2_hf
Expected r2 between standardized multilocus heterozygosity (h) and inbreeding level (f)
r2_Wf
Expected r2 between inbreeding level (f) and fitness (W)
mouse_msats
Oldfield mouse microsatellite data
HHC
Calculates heterzygosity-heterozygosity correlations with standardized multilocus heterozygosities (sMLH)
mouse_snps
Oldfield mouse SNP data
g2_snps
Estimating g2 from SNP data
inbreedR
inbreedR: Workflows for analysing variance in inbreeding and HFCs based on SNP or microsatellite markers.
plot.inbreed
Plot an inbreed object
g2_microsats
Estimating g2 from microsatellite data
resample_g2
Identity disequilibrium (g2) for different subsets of markers