incidence v1.7.0

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Compute, Handle, Plot and Model Incidence of Dated Events

Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. In addition, log-linear models can be fitted to 'incidence' objects using 'fit'. This package is part of the RECON (<http://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.

Functions in incidence

Name Description
dim.incidence Access various elements of an incidence object
fit Fit exponential models to incidence data
get_counts Get counts from an incidence object
as.data.frame.incidence Conversion of incidence objects
incidence_pal1 Color palettes used in incidence
plot.incidence Plot function for incidence objects
cumulate Compute cumulative 'incidence'
group_names extract and set group names
incidence Compute incidence of events from a vector of dates.
estimate_peak Estimate the peak date of an incidence curve using bootstrap
find_peak Find the peak date of an incidence curve
pool Pool 'incidence' across groups
subset.incidence Subsetting 'incidence' objects
get_dates Retrieve dates from an incidence object
get_fit Accessors for incidence_fit objects
bootstrap Bootstrap incidence time series
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Vignettes of incidence

Name
conversions.Rmd
customize_plot.Rmd
incidence_class.Rmd
incidence_fit_class.Rmd
overview.Rmd
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Details

Type Package
Date 2019-03-14
Encoding UTF-8
License MIT + file LICENSE
URL http://www.repidemicsconsortium.org/incidence/
BugReports http://github.com/reconhub/incidence/issues
RoxygenNote 6.1.1
VignetteBuilder knitr
NeedsCompilation no
Packaged 2019-03-14 16:04:52 UTC; zkamvar
Repository CRAN
Date/Publication 2019-03-14 16:30:10 UTC

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