incidental (version 0.1)

plot.incidence_spline_model: Plot model from fit_incidence

Description

Plot time, reported cases, incidence curve with credible interval, and implied case curve.

Usage

# S3 method for incidence_spline_model
plot(x, ...)

Arguments

x

An "incidence_spline_model" output from fit_incidence.

...

Other parameters that can be included:

• `times`: an optional vector of time indices.

• `plot_Chat`: a logical for whether Chat should be plotted.

• `plot_reported`: a logical for whether reported cases should be plotted.

• `plot_CI`: a logical for whether CI should be plotted.

Examples

# NOT RUN {
indiana_model <- fit_incidence(
                  reported = spanish_flu$Indiana, 
                  delay_dist = spanish_flu_delay_dist$proportion)
 plot(indiana_model, times = spanish_flu$Date)
# }