indicspecies (version 1.6.7)

summary.multipatt: Summarizing multi-level pattern analysis

Description

This is a summary function for multipatt objects.

Usage

## S3 method for class 'multipatt':
summary(object, alpha=0.05, minstat=NULL, At = NULL, Bt=NULL, indvalcomp=FALSE, ...)

encoding

UTF-8

Details

The summary function for multipatt objects presents the results of the analysis by grouping species following their associated site group combination. Only significantly associated species are listed for each combination. The user can limit the species shown by setting a significance level and the minimum value for the strength of the association.

See Also

strassoc, signassoc, multipatt

Examples

library(stats)

data(wetland) ## Loads species data

wetkm = kmeans(wetland, centers=3) ## Creates three clusters using kmeans

wetpt = multipatt(wetland, wetkm$cluster) ## Runs the combination analysis using IndVal.g as statistic

summary(wetpt) ## Lists those species with significant association to one combination

summary(wetpt, indvalcomp=TRUE) ## Lists those species with significant association to one combination. Includes indval components