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indicspecies (version 1.7.9)

Relationship Between Species and Groups of Sites

Description

Functions to assess the strength and statistical significance of the relationship between species occurrence/abundance and groups of sites [De Caceres & Legendre (2009) ]. Also includes functions to measure species niche breadth using resource categories [De Caceres et al. (2011) ].

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Version

Install

install.packages('indicspecies')

Monthly Downloads

2,597

Version

1.7.9

License

GPL (>= 2)

Maintainer

Miquel Caceres

Last Published

February 4th, 2020

Functions in indicspecies (1.7.9)

pigeons

Pigeon seed consumption data
multipatt

Multi-level pattern analysis
predict.indicators

Predicts site group from indicators
plotniche

Draws a single resource niche
combinespecies

Combines species from a community table
nichevar

Resource niche metrics for a single niche
signassoc

Statistical significance of species site-group associations
strassoc

Strength of species site-group associations
indicspecies-package

Studying the statistical relationship between species and groups of sites
birds

Birds resource use data
pruneindicators

Determines the best subset of indicators
coverage

Coverage of a set of indicators
summary.multipatt

Summarizing multi-level pattern analysis
indicators

Indicator analysis for species combinations
wetland

Wetland vegetation data set
nicheoverlap

Metrics to compare pairs of resource niches