inferCSN (version 1.2.0)

calculate_gene_rank: Rank TFs and genes in network

Description

Rank TFs and genes in network

Usage

calculate_gene_rank(
  network_table,
  regulators = NULL,
  targets = NULL,
  directed = FALSE
)

Value

A table of gene rank.

Arguments

network_table

The weight data table of network.

regulators

Regulators list.

targets

Targets list.

directed

Whether the network is directed.

Examples

data(example_matrix)
network_table <- inferCSN(example_matrix)
head(calculate_gene_rank(network_table))
head(calculate_gene_rank(network_table, regulators = "g1"))
head(calculate_gene_rank(network_table, targets = "g1"))