Retrieves genes identified as significantly DE based on the corresponding statistical test as applied to the infercnv_obj@expr.data with tumor/normal comparison
get_DE_genes_basic(infercnv_obj, p_val_thresh = 0.05, test.use = "wilcoxon")infercnv object
maximum p-value for defining statistical signficance
statistical test to use. (default: "t" for t-test)
all_DE_results[[condition_pair]] = list(tumor=tumor_type, normal=normal_type, pvals=pvals, de_genes=genes)