infercnv (version 0.8.2)

ngchm: ngchm() : generates next gen heatmap

Description

Function for Generating a next-generation heatmap

Usage

ngchm(infercnv_obj, out_dir = ".", title = "NGCHM", gene_symbol = NULL,
  path_to_shaidyMapGen = NULL, x.range = NA, x.center = NA)

Arguments

infercnv_obj

An infercnv object

out_dir

output directory (default: '.')

title

title of the interactive heatmap (default: "NGCHM")

gene_symbol

##TODO (default: NULL)

path_to_shaidyMapGen

path to the shaidyMapGen jar file (default: NULL)

x.range

(integer) Values for minimum and maximum thresholds for heatmap coloring.

x.center

(integer) Center expression value for heatmap coloring.