normalize_counts_by_seq_depth

infercnv_obj

total counts to scale the normalization to (default: NA, computed as described above)

normalize_factor

Normalizes count data by total sum scaling
For single cell data, a typical normalization factor is 1e5, providing counts per 100k total counts.
If a normalization factor is not provided, one is estimated based on:
 10^round(log10(mean(column_sums)))

Using single-cell RNA-Seq expression to visualize CNV in cells.

Timothy Tickle

infercnv

Infer Copy Number Variation from Single-Cell RNA-Seq Data

Itay Tirosh

Christophe Georgescu

Maxwell Brown

Brian Haas

normalize_counts_by_seq_depth function

normalize_counts_by_seq_depth() — normalize_counts_by_seq_depth

normalize_counts_by_seq_depth()

normalize_counts_by_seq_depth: normalize_counts_by_seq_depth()

Description

Usage

Arguments