clear_noise_via_ref_mean_sd

infercnv_obj

<p>multiplicative factor applied to the standard deviation to alter the noise
range (default: 1.5)</p>

sd_amplifier

<p>Define noise based on the standard deviation of the reference cell expression data.
The range to remove noise would be mean +- sdev * sd_amplifier
where sd_amplifier expands the range around the mean to be removed as noise.
Data points defined as noise are set to zero.</p>

Using single-cell RNA-Seq expression to visualize CNV in cells.

Timothy Tickle

infercnv

Infer Copy Number Variation from Single-Cell RNA-Seq Data

Itay Tirosh

Christophe Georgescu

Maxwell Brown

Brian Haas

clear_noise_via_ref_mean_sd function

clear_noise_via_ref_mean_sd() — clear_noise_via_ref_mean_sd

clear_noise_via_ref_mean_sd()

clear_noise_via_ref_mean_sd: clear_noise_via_ref_mean_sd()

Description

Usage

Arguments