Mask gene expression in infercnv_obj based on expression values that are found statistically significantly different between tumor/normal based on specified statistical test.
Uses the expression data stored in infercnv_obj@expr.data
mask_non_DE_genes_basic(infercnv_obj, p_val_thresh = 0.05,
test.use = "wilcoxon", center_val = mean(infercnv_obj@expr.data))infercnv object
p-value threshold for assigning DE statistically significant
statistical test to use. (default: "wilcoxon") alternatives include 'perm' or 't'.
value to assign to those genes that are not found to be statistically DE.
infercnv_obj