graphmlAsTidy

In order to be used by ingres,
GraphML files have to be converted to tidygraph format. This helper does that.

Given a gene regulatory boolean network and a RNA-seq dataset,
this package computes protein activity normalised enrichment scores
using 'VIPER', and then produces a probabilistic network using the scores
as probabilities for fixed node activation or deactivation,
in addition to the original Boolean functions.
For more information, refer to the preprint:
Victori and Buffa (2022) <doi:10.1101/2022.09.04.506528>.

Pedro Victori

ingres

Infer Gene Probabilistic Boolean Networks from Single-Cell Data

Francesca M. Buffa

graphmlAsTidy function

<dl><dt>filename</dt>
<dd>The path to the the GraphML file.</dd></dl>

Arguments

Convert GraphML format to tidygraph — graphmlAsTidy

<dl>

<dt>filename</dt>
<dd>The path to the the GraphML file.</dd>

</dl>

graphmlAsTidy: Convert GraphML format to tidygraph

Description

Usage

Value

Arguments

Examples